Please click onward to the case study. The case study contain the following pages:
Summary of the case study scenario, dataset downloads, and links to publications.
Opening a template, overview of structure, and the intial setup code chunk.
Choosing the appropriate methods to import your linelist.
Data dictionaries, cleaning variable names, and mapping to variable names expected by the template.
If applicable, import separate datasets giving region- or age-specific population figures and laboratory testing data.
Data exploration.
A variety of data cleaning steps and techniques.
Descriptive analyses of demographic and clinical variables.
Descriptive analyses (including “epidemic curves”) of temporal trends in incidence, attack and mortality rates and other characteristics.
Maps and tables showing the spatial distribution of incidence, attack and mortality rates, and other characteristics.
Using RMarkdown in RStudio to produce a polished Microsoft Word report.